Publications

2017
Eitam Arnon, Rabani, Eran , Neuhauser, Daniel , and Baer, Roi . 2017. Equilibrium Configurations Of Large Nanostructures Using The Embedded Saturated-Fragments Stochastic Density Functional Theory. J. Chem. Phys., 146, 22, Pp. 224111. Abstract
An ab initio Langevin dynamics approach is developed based on stochastic density functional theory (sDFT) within a new embedded fragment formalism. The forces on the nuclei generated by sDFT contain a random component natural to Langevin dynamics and its standard deviation is used to estimate the friction term on each atom by satisfying the fluctuation–dissipation relation. The overall approach scales linearly with system size even if the density matrix is not local and is thus applicable to ordered as well as disordered extended systems. We implement the approach for a series of silicon nanocrystals (NCs) of varying size with a diameter of up to 3nm corresponding to Ne = 3000 electrons and generate a set of configurations that are distributed canonically at a fixed temperature, ranging from cryogenic to room temperature. We also analyze the structure properties of the NCs and discuss the reconstruction of the surface geometry.
Rebecca Efrat Hadad and Baer, Roi . 2017. Minimally Corrected Partial Atomic Charges For Non-Covalent Electrostatic Interactions. Molecular Physics, Pp. 1-9. doi:10.1080/00268976.2017.1351628.
Vojtech Vlcek, Rabani, Eran , Neuhauser, Daniel , and Baer, Roi . 2017. Stochastic Gw Calculations For Molecules. Arxiv Preprint Arxiv:1612.08999. Abstract
Quasiparticle (QP) excitations are extremely important for understanding and predicting charge transfer and transport in molecules, nanostructures and extended systems. Since density functional theory (DFT) within Kohn-Sham (KS) formulation does not provide reliable QP energies, a many-body perturbation technique within the GW approximation are essential. The steep computational scaling of GW prohibits its use in extended, open boundary, systems with thousands of electrons and more. Recently, a stochastic formulation of GW has been proposed [Phys. Rev. Lett. 113, 076402 (2014)] which scales nearly linearly with the system size, as illustrated for a series of silicon nanocrystals exceeding 3000 electrons. Here, we implement the stochastic GW (sGW) approach to study the ionization potential (IP) of a subset of molecules taken from the "GW 100" benchmark. We show that sGW provides a reliable results in comparison to GW WEST code and to experimental results, numerically establishing its validity. For completeness, we also provide a detailed review of sGW and a summary of the numerical algorithm.
Dominika Zgid Daniel Neuhauser, Roi Baer. 2017. Stochastic Self-Consistent Second-Order Green’s Function Method For Correlation Energies Of Large Electronic Systems. Arxiv:1707.08296V2 [Physics.chem-Ph]. Abstract
The second-order Matsubara Green’s function method (GF2) is a robust temperature dependent quantum chemistry approach, extending beyond the random-phase approximation. However, till now the scope of GF2 applications was quite limited as they require computer resources which rise steeply with system size. In each step of the self-consistent GF2 calculation there are two parts: the estimation of the self-energy from the previous step’s Green’s function, and updating the Green’s function from the self-energy. The first part formally scales as the fifth power of the system size while the second has a much gentler cubic scaling. Here, we develop a stochastic approach to GF2 (sGF2) which reduces the fifth power scaling of the first step to merely quadratic, leaving the overall sGF2 scaling as cubic. We apply the method to linear hydrogen chains containing up to 1000 electrons, showing that the approach is numerically stable, efficient and accurate. The stochastic errors are very small, of the order of 0.1% or less of the correlation energy for large systems, with only a moderate computational effort. The first iteration of GF2 is an MP2 calculation that is done in linear scaling, hence we obtain an extremely fast stochastic MP2 (sMP2) method as a by-product. While here we consider finite systems with large band gaps where at low temperatures effects are negligible, the sGF2 formalism is temperature dependent and general and can be applied to finite or periodic systems with small gaps at finite temperatures.
2016
Vojtěch Vlček, Eisenberg, Helen R, Steinle-Neumann, Gerd , Rabani, Eran , Neuhuaser, Daniel , and Baer, Roi . 2016. Spontaneous Charge Carrier Localization In Extended One-Dimensional Systems. Phys. Rev. Lett., 116, Pp. 186401. Abstract
Charge carrier localization in extended atomic systems has been described previously as being driven by disorder, point defects, or distortions of the ionic lattice. Here we show for the first time by means of first-principles computations that charge carriers can spontaneously localize due to a purely electronic effect in otherwise perfectly ordered structures. Optimally tuned range-separated density functional theory and many-body perturbation calculations within the GW approximation reveal that in trans-polyacetylene and polythiophene the hole density localizes on a length scale of several nanometers. This is due to exchange-induced translational symmetry breaking of the charge density. Ionization potentials, optical absorption peaks, excitonic binding energies, and the optimally tuned range parameter itself all become independent of polymer length as it exceeds the critical localization length. Moreover, we find that lattice disorder and the formation of a polaron result from the charge localization in contrast to the traditional view that lattice distortions precede charge localization. Our results can explain experimental findings that polarons in conjugated polymers form instantaneously after exposure to ultrafast light pulses.
2014
Daniel Neuhauser, Gao, Yi , Arntsen, Christopher , Karshenas, Cyrus , Rabani, Eran , and Baer, Roi . 2014. Breaking The Theoretical Scaling Limit For Predicting Quasiparticle Energies: The Stochastic Gw Approach. Phys. Rev. Lett., 113, 7, Pp. 076402. Abstract
We develop a formalism to calculate the quasiparticle energy within the GW many-body perturbation correction to the density functional theory. The occupied and virtual orbitals of the Kohn-Sham Hamiltonian are replaced by stochastic orbitals used to evaluate the Green function G, the polarization potential W, and, thereby, the GW self-energy. The stochastic GW (sGW) formalism relies on novel theoretical concepts such as stochastic time-dependent Hartree propagation, stochastic matrix compression, and spatial or temporal stochastic decoupling techniques. Beyond the theoretical interest, the formalism enables linear scaling GW calculations breaking the theoretical scaling limit for GW as well as circumventing the need for energy cutoff approximations. We illustrate the method for silicon nanocrystals of varying sizes with Ne > 3000 electrons.
2013
Roi Baer, Neuhauser, Daniel , and Rabani, Eran . 2013. Self-Averaging Stochastic Kohn-Sham Density-Functional Theory. Phys. Rev. Lett., 111, Pp. 106402. doi:10.1103/PhysRevLett.111.106402. Abstract
We formulate the Kohn-Sham density functional theory (KS-DFT) as a statistical theory in which the electron density is determined from an average of correlated stochastic densities in a trace formula. The key idea is that it is sufficient to converge the total energy per electron to within a predefined statistical error in order to obtain reliable estimates of the electronic band structure, the forces on nuclei, the density and its moments, etc. The fluctuations in the total energy per electron are guaranteed to decay to zero as the system size increases. This facilitates “self-averaging” which leads to the first ever report of sublinear scaling KS-DFT electronic structure. The approach sidesteps calculation of the density matrix and thus, is insensitive to its evasive sparseness, as demonstrated here for silicon nanocrystals. The formalism is not only appealing in terms of its promise to far push the limits of application of KS-DFT, but also represents a cognitive change in the way we think of electronic structure calculations as this stochastic theory seamlessly converges to the thermodynamic limit.
2012
Leeor Kronik, Stein, Tamar , Refaely-Abramson, Sivan , and Baer, Roi . 2012. Excitation Gaps Of Finite-Sized Systems From Optimally Tuned Range-Separated Hybrid Functionals. J. Chem. Theory Comput., 8, 5, Pp. 1515–1531. Abstract
Excitation gaps are of considerable significance in electronic structure theory. Two different gaps are of particular interest. The fundamental gap is defined by charged excitations, as the difference between the first ionization potential and the first electron affinity. The optical gap is defined by a neutral excitation, as the difference between the energies of the lowest dipole-allowed excited state and the ground state. Within many-body perturbation theory, the fundamental gap is the difference between the corresponding lowest quasi-hole and quasi-electron excitation energies, and the optical gap is addressed by including the interaction between a quasi-electron and a quasi-hole. A long-standing challenge has been the attainment of a similar description within density functional theory (DFT), with much debate on whether this is an achievable goal even in principle. Recently, we have constructed and applied a new approach to this problem. Anchored in the rigorous theoretical framework of the generalized Kohn–Sham equation, our method is based on a range-split hybrid functional that uses exact long-range exchange. Its main novel feature is that the range-splitting parameter is not a universal constant but rather is determined from first principles, per system, based on satisfaction of the ionization potential theorem. For finite-sized objects, this DFT approach mimics successfully, to the best of our knowledge for the first time, the quasi-particle picture of many-body theory. Specifically, it allows for the extraction of both the fundamental and the optical gap from one underlying functional, based on the HOMO–LUMO gap of a ground-state DFT calculation and the lowest excitation energy of a linear-response time-dependent DFT calculation, respectively. In particular, it produces the correct optical gap for the difficult case of charge-transfer and charge-transfer-like scenarios, where conventional functionals are known to fail. In this perspective, we overview the formal and practical challenges associated with gap calculations, explain our new approach and how it overcomes previous difficulties, and survey its application to a variety of systems.
Adva Baratz and Baer, Roi . 2012. Nonmechanical Conductance Switching In A Molecular Tunnel Junction. J. Phys. Chem. Lett., 3, 4, Pp. 498–502. Abstract
We present a molecular junction composed of a donor (polyacetylene strands) and an acceptor (malononitrile) connected together via a benzene ring and coupled weakly to source and drain electrodes on each side, for which a gate electrode induces intramolecular charge transfer, switching reversibly the character of conductance. Using a new brand of density functional theory, for which orbital energies are similar to the quasiparticle energies, we show that the junction displays a single, gate-tunable differential conductance channel in a wide energy range. The gate field must align parallel to the displacement vector between donors and acceptor to affect their potential difference; for strong enough fields, spontaneous intramolecular electron transfer occurs. This event radically affects conductance, reversing the charge of carriers, enabling a spin-polarized current channel. We discuss the physical principles controlling the operation of the junction and find interplay of quantum interference, charging, Coulomb blockade, and electron-hole binding energy effects. We expect that this switching behavior is a generic property for similar donor-acceptor systems of sufficient stability.
2011
Raphael D Levine. 2011. Quantum Mechanics Of Molecular Rate Processes. Courier Corporation.
2010
R. Baer, Livshits, E. , and Salzner, U. . 2010. Tuned Range-Separated Hybrids In Density Functional Theory. Annu. Rev. Phys. Chem., 61, Pp. 85–109. doi:DOI: 10.1146/annurev.physchem.012809.103321.
2009
Raphael D Levine. 2009. Molecular Reaction Dynamics. Cambridge University Press.
Tamar Stein, Kronik, Leeor , and Baer, Roi . 2009. Prediction Of Charge-Transfer Excitations In Coumarin-Based Dyes Using A Range-Separated Functional Tuned From First Principles. J. Chem. Phys., 131, 24, Pp. 244119–5. Abstract
We study the description of charge-transfer excitations in a series of coumarin-based donor-bridge-acceptor dyes. We show that excellent predictive power for the excitation energies and oscillator strengths in these systems is obtained by using a range-separated hybrid functional within the generalized Kohn–Sham approach to time-dependent density functional theory. Key to this success is a step for tuning the range separation parameter from first principles. We explore different methods for this tuning step, which are variants of a recently suggested approach for charge-transfer excitations [T. Stein et al., J. Am. Chem. Soc. 131, 2818 (2009)]. We assess the quality of prediction by comparing to excitation energies previously published for the same systems using the approximate coupled-cluster singles and doubles (CC2) method.
2008
תמר רז-נחום and לוין, רפאל דוד. 2008. דינמיקה מולקולרית של תהליכים כימיים. האוניברסיטה הפתוחה.
1981
Avinoam Ben-Shaul, Haas, Yehuda , Levine, Raphael D. , and Kompa, Karl Ludwig . 1981. Lasers And Chemical Change. In Lasers And Chemical Change, Pp. 1–44. Berlin, Heidelberg: Springer Berlin Heidelberg. doi:10.1007/978-3-642-67826-4_1.